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1. A list of tools on proteomics using deep learning

   106 25

2. PepQuery: a targeted peptide search engine

   Java 15 2

3. PDV: an integrative proteomics data viewer

   Java 61 21

5. Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment

   Java 24 3

6. High quality in silico spectral library generation for data-independent acquisition proteomics

   Java 16 4