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Re: New version has switched build system to Maven

Re: New version has switched build system to Maven - any hint how to resolve dependencies?

Hi Emmanuel,

On Mon, Jan 28, 2019 at 09:15:49PM +0100, Emmanuel Bourg wrote:
> No no no it has to work, otherwise you'll run into many other issues...

Ahhh, another very helpful hint.  I was running mh_make now and was
merging its results in.  That was very enlightening and saved me some
stupid patches I did before just since I was to stupid to understand
maven-helper.
 
> > [ERROR] Failed to execute goal on project artemis: Could not resolve dependencies for project uk.ac.sanger:artemis:jar:18.0.1: The following artifacts could not be resolved: org.apache.xmlgraphics:batik-codec:jar:1.9.1, org.apache.xmlgraphics:batik-dom:jar:1.9.1, org.apache.xmlgraphics:batik-ext:jar:1.9.1, org.apache.xmlgraphics:batik-svggen:jar:1.9.1, org.apache.xmlgraphics:batik-util:jar:1.9.1, com.ibatis:ibatis:jar:2.3.4.726, cglib:cglib-nodep:jar:2.2, com.sshtools:j2ssh-core:jar:0.2.9, org.emboss:jemboss:jar:1.0, org.biojava:biojava:jar:1.6, com.github.broadinstitute:picard:jar:2.18.14, org.evosuite:evosuite-standalone-runtime:jar:1.0.6, org.mockito:mockito-core:jar:2.23.0: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.xmlgraphics:batik-codec:jar:1.9.1 has not been downloaded from it before. -> [Help 1]
> 
> ...like this one :)

On the other hand I think there are some remaining packages that are
not featuring proper maven helper.  So I'm now remaining with:


[INFO] ------------------------< uk.ac.sanger:artemis >------------------------
[INFO] Building Artemis 18.0.1
[INFO] --------------------------------[ jar ]---------------------------------
[WARNING] The POM for com.ibatis:ibatis:jar:debian is missing, no dependency information available
[WARNING] The POM for com.sshtools:j2ssh-core:jar:debian is missing, no dependency information available
[WARNING] The POM for org.emboss:jemboss:jar:debian is missing, no dependency information available
[WARNING] The POM for org.biojava:biojava:jar:debian is missing, no dependency information available
[WARNING] The POM for com.github.broadinstitute:picard:jar:debian is missing, no dependency information available
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  0.450 s
[INFO] Finished at: 2019-01-29T08:29:42Z
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal on project artemis: Could not resolve dependencies for project uk.ac.sanger:artemis:jar:18.0.1: The following artifacts could not be resolved: com.ibatis:ibatis:jar:debian, com.sshtools:j2ssh-core:jar:debian, org.emboss:jemboss:jar:debian, org.biojava:biojava:jar:debian, com.github.broadinstitute:picard:jar:debian: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact com.ibatis:ibatis:jar:debian has not been downloaded from it before. -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException


which are less issues but the according JARs are definitely inside Debian:

     com.ibatis:ibatis:jar:debian -> libibatis-java
     com.sshtools:j2ssh-core:jar:debian -> libj2ssh-java
     org.emboss:jemboss:jar:debian -> jemboss
     org.biojava:biojava:jar:debian -> libbiojava-java
     com.github.broadinstitute:picard:jar:debian -> picard-tools

While the latter three are in possession of the Debian Med team and I'm
willing to add proper maven metadata to enable correct detection for the
future, I think there are some replacement rules which would let the
package build.  Unfortunately I never have understand these
substitutions done in debian/maven.rules and I wonder whether some kind
soul can provide me with a patch for the said packages.

Kind regards

      Andreas.

-- 
http://fam-tille.de
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