ComponentFeature (biojava-legacy 1.9.5 API)

ComponentFeature (biojava-legacy 1.9.5 API)

Nested Class Summary

Nested Classes
Modifier and Type Interface Description

static class ComponentFeature.Template
Template for constructing a new ComponentFeature.
- Nested classes/interfaces inherited from interface org.biojava.bio.Annotatable
  Annotatable.AnnotationForwarder
- Nested classes/interfaces inherited from interface org.biojava.bio.seq.Feature
  Feature.ByLocationComparator
- Nested classes/interfaces inherited from interface org.biojava.bio.seq.FeatureHolder
  FeatureHolder.EmptyFeatureHolder
- Nested classes/interfaces inherited from interface org.biojava.bio.seq.StrandedFeature
  StrandedFeature.Strand

Field Summary
- Fields inherited from interface org.biojava.bio.Annotatable
  ANNOTATION
- Fields inherited from interface org.biojava.bio.seq.Feature
  byLocationOrder, LOCATION, PROPERTY_DATA_KEY, SOURCE, SOURCETERM, TYPE, TYPETERM
- Fields inherited from interface org.biojava.bio.seq.FeatureHolder
  EMPTY_FEATURE_HOLDER, FEATURES, SCHEMA
- Fields inherited from interface org.biojava.bio.seq.StrandedFeature
  NEGATIVE, POSITIVE, STRAND, UNKNOWN

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method	Description
`Location`	`getComponentLocation()`	Return a location which identifies a portion of the component sequence which is to be included in the assembly.
`Sequence`	`getComponentSequence()`	Get the sequence object which provides a component of this feature's parent sequence.
`String`	`getComponentSequenceName()`	Get the name of the component sequence.
`boolean`	`isComponentResolvable()`	Determine if the sequence references by this ComponentFeature is available in this context.

Methods inherited from interface org.biojava.bio.Annotatable
getAnnotation

Methods inherited from interface org.biojava.utils.Changeable
addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener

Methods inherited from interface org.biojava.bio.seq.Feature
features, getLocation, getParent, getSequence, getSource, getSourceTerm, getType, getTypeTerm, makeTemplate, setLocation, setSource, setSourceTerm, setType, setTypeTerm

Methods inherited from interface org.biojava.bio.seq.FeatureHolder
containsFeature, countFeatures, createFeature, filter, filter, getSchema, removeFeature

Methods inherited from interface org.biojava.bio.seq.StrandedFeature
getStrand, getSymbols, setStrand