FramedFeature (biojava-legacy 1.9.5 API)

FramedFeature (biojava-legacy 1.9.5 API)

Nested Class Summary

Nested Classes
Modifier and Type Interface Description

static class FramedFeature.ReadingFrame
A singleton to hold the frame information

static class FramedFeature.Template
- Nested classes/interfaces inherited from interface org.biojava.bio.Annotatable
  Annotatable.AnnotationForwarder
- Nested classes/interfaces inherited from interface org.biojava.bio.seq.Feature
  Feature.ByLocationComparator
- Nested classes/interfaces inherited from interface org.biojava.bio.seq.FeatureHolder
  FeatureHolder.EmptyFeatureHolder
- Nested classes/interfaces inherited from interface org.biojava.bio.seq.StrandedFeature
  StrandedFeature.Strand

Field Summary

Fields
Modifier and Type Field Description

static FramedFeature.ReadingFrame FRAME_0

static FramedFeature.ReadingFrame FRAME_1

static FramedFeature.ReadingFrame FRAME_2
- Fields inherited from interface org.biojava.bio.Annotatable
  ANNOTATION
- Fields inherited from interface org.biojava.bio.seq.Feature
  byLocationOrder, LOCATION, PROPERTY_DATA_KEY, SOURCE, SOURCETERM, TYPE, TYPETERM
- Fields inherited from interface org.biojava.bio.seq.FeatureHolder
  EMPTY_FEATURE_HOLDER, FEATURES, SCHEMA
- Fields inherited from interface org.biojava.bio.seq.StrandedFeature
  NEGATIVE, POSITIVE, STRAND, UNKNOWN

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method	Description
`FramedFeature.ReadingFrame`	`getReadingFrame()`	return the reading frame of the feature.
`StrandedFeature.Strand`	`getStrand()`	Retrieve the strand that this feature lies upon.

Methods inherited from interface org.biojava.bio.Annotatable
getAnnotation

Methods inherited from interface org.biojava.utils.Changeable
addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener

Methods inherited from interface org.biojava.bio.seq.Feature
features, getLocation, getParent, getSequence, getSource, getSourceTerm, getType, getTypeTerm, makeTemplate, setLocation, setSource, setSourceTerm, setType, setTypeTerm

Methods inherited from interface org.biojava.bio.seq.FeatureHolder
containsFeature, countFeatures, createFeature, filter, filter, getSchema, removeFeature

Methods inherited from interface org.biojava.bio.seq.StrandedFeature
getSymbols, setStrand