RemoteFeature (biojava-legacy 1.9.5 API)
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Nested Class Summary
Nested Classes Modifier and Type Interface Description static classRemoteFeature.RegionA tuple of Location and sequence ID.
static interfaceRemoteFeature.ResolverThe interface for objects that actually can take a RemoteFeature and return a Sequence object with the feature resolved into a real feature.
static classRemoteFeature.Template-
Nested classes/interfaces inherited from interface org.biojava.bio.Annotatable
Annotatable.AnnotationForwarder
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Nested classes/interfaces inherited from interface org.biojava.bio.seq.Feature
Feature.ByLocationComparator
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Nested classes/interfaces inherited from interface org.biojava.bio.seq.FeatureHolder
FeatureHolder.EmptyFeatureHolder
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Nested classes/interfaces inherited from interface org.biojava.bio.seq.StrandedFeature
StrandedFeature.Strand
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Field Summary
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Fields inherited from interface org.biojava.bio.Annotatable
ANNOTATION
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Fields inherited from interface org.biojava.bio.seq.Feature
byLocationOrder, LOCATION, PROPERTY_DATA_KEY, SOURCE, SOURCETERM, TYPE, TYPETERM
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Fields inherited from interface org.biojava.bio.seq.FeatureHolder
EMPTY_FEATURE_HOLDER, FEATURES, SCHEMA
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Fields inherited from interface org.biojava.bio.seq.StrandedFeature
NEGATIVE, POSITIVE, STRAND, UNKNOWN
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Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description ListgetRegions()Retrieve the list of Regions that locate this feature both localy and remotely.
FeaturegetRemoteFeature()Retrieve the Feature on some assembly Sequence that can represent this RemoteFeature properly.
RemoteFeature.ResolvergetResolver()-
Methods inherited from interface org.biojava.bio.Annotatable
getAnnotation
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Methods inherited from interface org.biojava.utils.Changeable
addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener
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Methods inherited from interface org.biojava.bio.seq.Feature
features, getLocation, getParent, getSequence, getSource, getSourceTerm, getType, getTypeTerm, makeTemplate, setLocation, setSource, setSourceTerm, setType, setTypeTerm
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Methods inherited from interface org.biojava.bio.seq.FeatureHolder
containsFeature, countFeatures, createFeature, filter, filter, getSchema, removeFeature
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Methods inherited from interface org.biojava.bio.seq.StrandedFeature
getStrand, getSymbols, setStrand
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