SimpleRestrictionSite (biojava-legacy 1.9.5 API)

SimpleRestrictionSite (biojava-legacy 1.9.5 API)

Nested Class Summary
- Nested classes/interfaces inherited from interface org.biojava.bio.Annotatable
  Annotatable.AnnotationForwarder
- Nested classes/interfaces inherited from interface org.biojava.bio.seq.Feature
  Feature.ByLocationComparator, Feature.Template
- Nested classes/interfaces inherited from interface org.biojava.bio.seq.FeatureHolder
  FeatureHolder.EmptyFeatureHolder
- Nested classes/interfaces inherited from interface org.biojava.bio.molbio.RestrictionSite
  RestrictionSite.Template
- Nested classes/interfaces inherited from interface org.biojava.bio.seq.StrandedFeature
  StrandedFeature.Strand, StrandedFeature.Template

Field Summary
- Fields inherited from interface org.biojava.bio.Annotatable
  ANNOTATION
- Fields inherited from interface org.biojava.bio.seq.Feature
  byLocationOrder, LOCATION, PROPERTY_DATA_KEY, SOURCE, SOURCETERM, TYPE, TYPETERM
- Fields inherited from interface org.biojava.bio.seq.FeatureHolder
  EMPTY_FEATURE_HOLDER, FEATURES, SCHEMA
- Fields inherited from interface org.biojava.bio.seq.StrandedFeature
  NEGATIVE, POSITIVE, STRAND, UNKNOWN

Constructor Summary

Constructors
Constructor	Description
`SimpleRestrictionSite(Sequence sourceSeq, FeatureHolder parent, RestrictionSite.Template template)`	Creates a new `SimpleRestrictionSite`.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`RestrictionEnzyme`	`getEnzyme()`	`getEnzyme` returns the enzyme which cuts at this site.
`int`	`getPosition()`	`getPosition` returns the common, forward strand cut site.
`String`	`toString()`

Methods inherited from class org.biojava.bio.seq.impl.SimpleStrandedFeature
fillTemplate, getStrand, getSymbols, makeTemplate, setStrand

Methods inherited from class org.biojava.bio.seq.impl.SimpleFeature
containsFeature, countFeatures, createFeature, equals, featureHolderAllocated, features, fillTemplate, filter, filter, getAnnotation, getChangeSupport, getFeatureHolder, getLocation, getParent, getSchema, getSequence, getSource, getSourceTerm, getType, getTypeTerm, hashCode, realizeFeature, removeFeature, setLocation, setSource, setSourceTerm, setType, setTypeTerm

Methods inherited from class org.biojava.utils.AbstractChangeable
addChangeListener, addChangeListener, generateChangeSupport, hasListeners, hasListeners, isUnchanging, removeChangeListener, removeChangeListener

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.biojava.bio.Annotatable
getAnnotation

Methods inherited from interface org.biojava.utils.Changeable
addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener

Methods inherited from interface org.biojava.bio.seq.Feature
features, getLocation, getParent, getSequence, getSource, getSourceTerm, getType, getTypeTerm, makeTemplate, setLocation, setSource, setSourceTerm, setType, setTypeTerm

Methods inherited from interface org.biojava.bio.seq.FeatureHolder
containsFeature, countFeatures, createFeature, filter, filter, getSchema, removeFeature

Methods inherited from interface org.biojava.bio.seq.StrandedFeature
getStrand, getSymbols, setStrand